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Assignment 2 complete #2

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9c83001
Assignment 2 complete
May 11, 2025
cd174bd
change absolute to relative paths
May 14, 2025
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202 changes: 176 additions & 26 deletions 02_activities/assignments/assignment_2.ipynb
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -72,31 +72,160 @@
},
{
"cell_type": "code",
"execution_count": null,
"execution_count": 11,
"metadata": {
"id": "n0m48JsS-nMC"
},
"outputs": [],
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
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"\n",
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"\n",
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"\n",
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"\n",
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"\n",
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"\n",
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"\n",
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"\n",
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"\n",
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"\n",
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"\n",
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"\n",
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"\n",
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"\n",
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"\n"
]
}
],
"source": [
"all_paths = [\n",
" \"python/05_src/data/assignment_2_data/inflammation_01.csv\",\n",
" \"python/05_src/data/assignment_2_data/inflammation_02.csv\",\n",
" \"python/05_src/data/assignment_2_data/inflammation_03.csv\",\n",
" \"python/05_src/data/assignment_2_data/inflammation_04.csv\",\n",
" \"python/05_src/data/assignment_2_data/inflammation_05.csv\",\n",
" \"python/05_src/data/assignment_2_data/inflammation_06.csv\",\n",
" \"python/05_src/data/assignment_2_data/inflammation_07.csv\",\n",
" \"python/05_src/data/assignment_2_data/inflammation_08.csv\",\n",
" \"python/05_src/data/assignment_2_data/inflammation_09.csv\",\n",
" \"python/05_src/data/assignment_2_data/inflammation_10.csv\",\n",
" \"python/05_src/data/assignment_2_data/inflammation_11.csv\",\n",
" \"python/05_src/data/assignment_2_data/inflammation_12.csv\"\n",
" \"../../05_src/data/assignment_2_data/inflammation_01.csv\",\n",
" \"../../05_src/data/assignment_2_data/inflammation_02.csv\",\n",
" \"../../05_src/data/assignment_2_data/inflammation_03.csv\",\n",
" \"../../05_src/data/assignment_2_data/inflammation_04.csv\",\n",
" \"../../05_src/data/assignment_2_data/inflammation_05.csv\",\n",
" \"../../05_src/data/assignment_2_data/inflammation_06.csv\",\n",
" \"../../05_src/data/assignment_2_data/inflammation_07.csv\",\n",
" \"../../05_src/data/assignment_2_data/inflammation_08.csv\",\n",
" \"../../05_src/data/assignment_2_data/inflammation_09.csv\",\n",
" \"../../05_src/data/assignment_2_data/inflammation_10.csv\",\n",
" \"../../05_src/data/assignment_2_data/inflammation_11.csv\",\n",
" \"../..//05_src/data/assignment_2_data/inflammation_12.csv\"\n",
"]\n",
"\n",
"with open(all_paths[0], 'r') as f:\n",
" # YOUR CODE HERE: Use the readline() or readlines() method to read the .csv file into a variable\n",
" \n",
" # YOUR CODE HERE: Iterate through the variable using a for loop and print each row for inspection"
" lines = f.readlines()\n",
" # YOUR CODE HERE: Iterate through the variable using a for loop and print each row for inspection\n",
"for line in lines:\n",
" print(line)"
]
},
{
Expand Down Expand Up @@ -145,12 +274,15 @@
" # Implement the specific operation based on the 'operation' argument\n",
" if operation == 'mean':\n",
" # YOUR CODE HERE: Calculate the mean (average) number of flare-ups for each patient\n",
" summary_values = np.mean(data, axis=1) # calculates ave. for each patient\n",
"\n",
" elif operation == 'max':\n",
" # YOUR CODE HERE: Calculate the maximum number of flare-ups experienced by each patient\n",
" summary_values = np.max(data, axis=1) # calculates max for each patient\n",
"\n",
" elif operation == 'min':\n",
" # YOUR CODE HERE: Calculate the minimum number of flare-ups experienced by each patient\n",
" summary_values = np.min(data, axis=1) # calculates min for each patient\n",
"\n",
" else:\n",
" # If the operation is not one of the expected values, raise an error\n",
Expand All @@ -161,11 +293,19 @@
},
{
"cell_type": "code",
"execution_count": null,
"execution_count": 10,
"metadata": {
"id": "3TYo0-1SDLrd"
},
"outputs": [],
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"60\n"
]
}
],
"source": [
"# Test it out on the data file we read in and make sure the size is what we expect i.e., 60\n",
"# Your output for the first file should be 60\n",
Expand Down Expand Up @@ -228,7 +368,7 @@
},
{
"cell_type": "code",
"execution_count": null,
"execution_count": 11,
"metadata": {
"id": "_svDiRkdIwiT"
},
Expand All @@ -251,7 +391,7 @@
},
{
"cell_type": "code",
"execution_count": null,
"execution_count": 15,
"metadata": {
"id": "LEYPM5v4JT0i"
},
Expand All @@ -261,15 +401,24 @@
"\n",
"def detect_problems(file_path):\n",
" #YOUR CODE HERE: Use patient_summary() to get the means and check_zeros() to check for zeros in the means\n",
"\n",
" return"
" means = patient_summary(file_path,'mean') # gets means\n",
" has_zeros = check_zeros(means) # checks for zeros\n",
" return has_zeros # returns the results as a boolean"
]
},
{
"cell_type": "code",
"execution_count": null,
"execution_count": 14,
"metadata": {},
"outputs": [],
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"False\n"
]
}
],
"source": [
"# Test out your code here\n",
"# Your output for the first file should be False\n",
Expand Down Expand Up @@ -314,7 +463,8 @@
"provenance": []
},
"kernelspec": {
"display_name": "Python 3",
"display_name": "dsi_participant",
"language": "python",
"name": "python3"
},
"language_info": {
Expand All @@ -327,7 +477,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.11.8"
"version": "3.9.7"
}
},
"nbformat": 4,
Expand Down
1 change: 1 addition & 0 deletions 04_this_cohort/live_code/provinces.txt
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Original file line number Diff line number Diff line change
@@ -0,0 +1 @@
BCAlbertaSaskatchewanManitobaOntarioQuebecNew BrunswickNova ScotiaPrince Edward IslandNewfoundland and Labrador
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