Popular repositories Loading

1. mlst mlst Public

   Forked from tseemann/mlst

   🆔 Scan contig files against PubMLST typing schemes

   Perl

2. maskrc-svg maskrc-svg Public

   Forked from kwongj/maskrc-svg

   Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG

   Python

3. SNPBac SNPBac Public

   Forked from lmc297/SNPBac

   SNP and variant calling pipeline for bacteria

4. gubbins gubbins Public

   Forked from nickjcroucher/gubbins

   Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

   C

5. nullarbor nullarbor Public

   Forked from tseemann/nullarbor

   💾 📃 "Reads to report" for public health and clinical microbiology

   Perl

6. snippy snippy Public

   Forked from tseemann/snippy

   ✂️ ⚡ Rapid haploid variant calling and core genome alignment

   Perl