1.8.2 (June 06, 2022)

Bug-fix release in the 1.8.x series.

This release restores compatibility with networkx 2.8.3, which errors when
graph nodes might conflict with pydot parsing.

Full changelog: https://github.com/nipy/nipype/milestone/1.8.2?closed=1

  * ENH: Enable compression with Gunzip interface (nipy#3472)
  * CI: Schedule weekly tests with cron (nipy#3480)

1.8.1 (May 16, 2022)

Bug-fix release in the 1.8.x series.

The previous release vendored ``distutils.version.LooseVersion``, and the vendored objects did not
preserve compatiblity with the ``distutils`` objects. This release switches to the
``looseversion`` package that ensures compatiblity.

1.8.0 (May 10, 2022)

New feature release in the 1.8.x series.

The primary new features are a batch of PETSurfer interfaces.

This release drops support for Python < 3.7 and Numpy < 1.17, triggering a minor version bump.
Additionally, matplotlib < 2.1 will stop working with some interfaces, but more recent versions
will start working.

(`Full changelog <https://github.com/nipy/nipype/milestone/1.8.0?closed=1>`__)

  * FIX: Change plt.hist() argument from deprecated 'normed' to 'density' (nipy#3455)
  * ENH: Add random seed option to ANTs registration (nipy#3463)
  * ENH: Add PETsurfer interfaces (nipy#3437)
  * ENH: Add Text2Vest and Vest2Text interfaces (nipy#3447)
  * REF: Optimize ICC_rep_anova with a memoized helper function (nipy#3454)
  * REF: Rearranging matmul order and using hermitian flag in ICC_rep_anova  (nipy#3453)
  * MNT: Drop distutils (nipy#3458)
  * CI: Cache test data (nipy#3459)

1.7.1 (April 05, 2022)

Full changelog: https://github.com/nipy/nipype/milestone/1.7.1?closed=1

* FIX: Allow ``ConvertScalarImageToRGBInputSpec.mask_file`` to be ``"none"`` (nipy#3364)
* FIX: Use a more robust strategy for detecting ANTs version (nipy#3444)
* FIX: Retry renaming pkl(z) files on failure (nipy#3404)
* FIX: Escape metacharacters when parsing dcm2niix outputs (nipy#3417)
* FIX: Import error for nipype.interfaces.dipy.base (nipy#3414)
* FIX: ``ValueError`` when using ``ResourceMonitor`` (nipy#3419)
* FIX: Improve error handling of ``CommandLine`` interfaces (nipy#3395)
* FIX: Bugs in ApplyVDM interface (nipy#3396)
* ENH: Add MRTrix3 interfaces (pared-down nipygh-3426) (nipy#3445)
* ENH: Enable BidsDataGrabber to load saved layouts (nipy#3421)
* ENH: ROBEX interface (nipy#3443)
* ENH: Include several operations to ANTs's ImageMath interface, including ReplicateImage and ReplicateDisplacement (nipy#3435)
* ENH: Add "GenericLabel" to antsRegistration interpolation option. (nipy#3424)
* ENH: added Apply VDM functionality to FieldMap SPM interface (nipy#3394)
* DOC: Side bar and main page fixes (nipy#3397)
* TEST: Allow SVD columns to flip sign (nipy#3405)
* MNT: rename dipy ``move_streamlines`` to ``transform_tracking_output`` (nipy#3412)
* MNT: Test on Python 3.10 (nipy#3438)
* MNT: Added ORCID iD (nipy#3436)

1.7.0 (October 20, 2021)

Full changelog: https://github.com/nipy/nipype/milestone/1.7.0?closed=1

  * FIX: Make ants.LaplacianThickness output_image a string, not file (nipy#3393)
  * FIX: coord for mrconvert (nipy#3369)
  * FIX: ``antsRegistration`` allows the ``restrict_deformation`` to be float  (nipy#3387)
  * FIX: Also allow `errno.EBUSY` during `emptydirs` on NFS  (nipy#3357)
  * FIX: Removed exists=True from MathsOutput (nipy#3385)
  * FIX: Extension not extensions, after pybids v0.9 (nipy#3380)
  * ENH: Add CAT12 SANLM denoising filter (nipy#3374)
  * ENH: Add expected steps for FreeSurfer 7 recon-all  (nipy#3389)
  * ENH: Stop printing false positive differences when logging cached nodes  (nipy#3376)
  * ENH: Add new flags to MRtrix/preprocess.py (DWI2Tensor, MRtransform)  (nipy#3365)
  * ENH: ``verbose`` input should not be hashed in ``ants.Registration`` (nipy#3377)
  * REF: Clean-up the BaseInterface ``run()`` function using context (nipy#3347)
  * DOC: Fix typo in README  (nipy#3386)
  * STY: Make private member name consistent with the rest of them (nipy#3346)
  * MNT: Simplify interface execution and better error handling of ``Node`` (nipy#3349)
  * MNT: Add user name and email to Docker to appease git/annex/datalad (nipy#3378)
  * CI: Update CircleCI machine image  (nipy#3391)

1.6.1 (June 16, 2021)

Bug-fix release in the 1.6.x series.

Full changelog: <https://github.com/nipy/nipype/milestone/1.6.1?closed=1

  * FIX: Set DistributedPluginBase.refidx type correctly (nipy#3340)
  * FIX: change fsl interface randomise --f_only to --fonly for nipy#3322 (nipy#3325)
  * FIX: BET raising "No image files match: ..." with very long file names (nipy#3309)
  * FIX: Update SmoothEstimateOutputSpec resels description (nipy#3316)
  * ENH: Adds interfaces for MRtrix utils shconv and sh2amp (nipy#3280)
  * ENH: Interface for R (nipy#3291)
  * ENH: Add CAT12 interfaces (nipy#3310)
  * ENH: AFNI 3dNetCorr as afni.NetCorr (nipy#3263)
  * ENH: Skip newline before Python call in batch submission to facilitate containerized runs (nipy#3297)
  * ENH: Add new dwifslpreproc interface for MRtrix3 (nipy#3278)
  * REF: Cache nodes in workflow to speed up construction, other optimizations (nipy#3331)
  * DOC: Fixed Developer Setup Link in install.rst (nipy#3330)
  * MNT: Blacklist Dipy 1.4.1 (nipy#3335)
  * MNT: Drop support for numpy < 1.15.3 (nipy#3284)
  * CI: Build docker images with Python 3.8 (nipy#3287)
  * CI: Drop Circle doc builds (nipy#3338)
  * CI: Drop Travis (nipy#3332)
  * CI: Build docker images with Python 3.8 (nipy#3287)
  * CI: Add specs and style checks (nipy#3321)
  * CI: Move from Travis to GitHub actions (nipy#3318)

1.6.0 (November 28, 2020)

New feature release in the 1.6.x series.

In addition to the usual bug fixes, significant reductions were made
in workflow startup costs.

  * FIX: Canonicalize environment dicts to strings in Windows (nipy#3267)
  * FIX: Purge deprecated exception content accesses (nipy#3272)
  * FIX: Handle changes in CLI structure of mrtrix3.DWIBiasCorrect (nipy#3248)
  * FIX: EpiReg changed to not list certain outputs when 'wmseg' input is specified (nipy#3265)
  * FIX: CI issues (nipy#3262)
  * FIX: SPM SliceTiming must accept either Int or float for ref_slice and sli… (nipy#3255)
  * FIX: Raise version error when using ``-g`` with ``antsAI`` < 2.3.0 (nipy#3256)
  * FIX: No longer depending on pydotplus (networkx >=2.0 update) (nipy#3251)
  * FIX: ANTs' utilities revision - bug fixes and add more operations to ``ants.ImageMath`` (nipy#3236)
  * ENH: Handle unavailable traits due to version differences (nipy#3273)
  * ENH: Optimize workflow.run performance (nipy#3260)
  * DOC: Remove myself (@mr-c) from the zenodo metadata (nipy#3271)

1.5.1 (August 16, 2020)

Bug-fix release in the 1.5.x series.

This release includes small updates to ANTs utilities that lie somewhere
between bug fixes and enhancements.

(`Full changelog <https://github.com/nipy/nipype/milestone/1.5.1?closed=1>`__)

  * FIX: Warn for min/max_ver traits when tool version can't be parsed (nipy#3241)
  * FIX: Serialize all interface arguments when exporting workflows (nipy#3240)
  * FIX: Permit identity transforms in list of transforms given to ants.ApplyTransforms (nipy#3237)
  * FIX: ANTs' utilities revision - bug fixes and add more operations to ``ants.ImageMath`` (nipy#3236)
  * DOC: Skip BIDSDataGrabber doctest if pybids is missing (nipy#3224)

1.5.0 (June 03, 2020)

New feature release in the 1.5.x series.

In this release, the example scripts have been split out into their own package:
`niflow-nipype1-examples <https://github.com/niflows/nipype1-examples>`__.

(`Full changelog <https://github.com/nipy/nipype/milestone/1.5.0?closed=1>`__)

  * FIX: volterra_expansion_order documentation error (nipy#3213)
  * FIX: BET incorrect output paths (nipy#3214)
  * FIX: Terminal output in ``report.rst`` spreads one line per character (nipy#3220)
  * FIX: Allow parsing freesurfer 7 version string (nipy#3216)
  * FIX: Use PackageInfo to get NiftyReg version (nipy#3194)
  * FIX: Partial rollback of N4BiasFieldCorrection (nipy#3188)
  * FIX: ANTs' tools maintenance overhaul (nipy#3180)
  * FIX: load_resultfile crashes if open resultsfile from crashed job (nipy#3182)
  * FIX: FSL model.py make multiple F-tests (nipy#3166)
  * ENH: Restore ants.legacy interfaces (nipy#3222)
  * ENH: Add ``"TruncateImageIntensity"`` operation to ``ants.utils.Image.Math`` (nipy#3210)
  * ENH: SPM NewSegment multi-channel segmentation (nipy#3162)
  * ENH: Add reverse-ordered transform lists to ants.Registration outputs (nipy#3192)
  * ENH: Improve workflow connect performance (nipy#3184)
  * ENH: Add ``ConstrainedSphericalDeconvolution`` interface to replace ``EstimateFOD`` for MRtrix3's ``dwi2fod`` (nipy#3176)
  * ENH: Detect values for EulerNumber interface (nipy#3173)
  * ENH: Remove examples from repository (nipy#3172)
  * TEST: Clean up tests (nipy#3195)
  * TEST: Mock terminal output before testing changing default value (nipy#3193)
  * REF: make invocations of python and pytest consistent with the one used/desired python (nipy#3208)
  * REF: Prefer math.gcd to hand-rolled Euclid's algorithm (nipy#3177)
  * REF: Removed all uses of numpy_mmap (nipy#3121)
  * DOC: Sphinx 3 compatibility (nipy#3206)
  * DOC: Update links, typos in contributing guide (nipy#3160)
  * DOC: Update SelectFiles docstring to match actual behavior (nipy#3041)
  * DOC: Updated .zenodo.json file (nipy#3167)
  * DOC: Update .zenodo.json (nipy#3165)
  * MNT: Permit recent nilearns (nipy#2841)
  * MNT: Test Python 3.8 (nipy#3154)
  * MNT: Restore ReadTheDocs (nipy#3207)
  * MNT: Update Zenodo ordering based on commit count (nipy#3169)

1.5.0-rc1

Release candidate for the new feature release in the 1.5.x series.

In this release, the example scripts have been split out into their own package:
`niflow-nipype1-examples <https://github.com/niflows/nipype1-examples>`__.

(`Full changelog <https://github.com/nipy/nipype/milestone/1.5.0?closed=1>`__)

  * FIX: Partial rollback of N4BiasFieldCorrection (nipy#3188)
  * FIX: ANTs' tools maintenance overhaul (nipy#3180)
  * FIX: load_resultfile crashes if open resultsfile from crashed job (nipy#3182)
  * FIX: FSL model.py make multiple F-tests (nipy#3166)
  * ENH: Improve workflow connect performance (nipy#3184)
  * ENH: Add ``ConstrainedSphericalDeconvolution`` interface to replace ``EstimateFOD`` for MRtrix3's ``dwi2fod`` (nipy#3176)
  * ENH: Detect values for EulerNumber interface (nipy#3173)
  * ENH: Remove examples from repository (nipy#3172)
  * REF: Prefer math.gcd to hand-rolled Euclid's algorithm (nipy#3177)
  * REF: Removed all uses of numpy_mmap (nipy#3121)
  * DOC: Update links, typos in contributing guide (nipy#3160)
  * DOC: Update SelectFiles docstring to match actual behavior (nipy#3041)
  * DOC: Updated .zenodo.json file (nipy#3167)
  * DOC: Update .zenodo.json (nipy#3165)
  * MNT: Update Zenodo ordering based on commit count (nipy#3169)