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@papaemmelab

Elli Papaemmanuil Lab

We study the role of acquired mutations in cancer development and how these determine clinical phenotype and response to therapy.

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  1. ipssm ipssm Public

    Molecular International Prognostic Scoring System IPSS-M for Myelodysplastic Syndromes

    R 11 5

  2. toil_container toil_container Public

    🐳 Toil + Docker and Singularity.

    Python 9 6

  3. split_bed_by_index split_bed_by_index Public

    Split bed intervals by estimated read counts from bam index

    Nim 9

  4. split_bed_by_reads split_bed_by_reads Public

    Split bed intervals by maximum read counts

    Nim 9

  5. cookiecutter-toil cookiecutter-toil Public

    🍪 Cookiecutter template for Class Based Toil pipelines.

    Python 4 1

  6. register_apps register_apps Public

    👾 Register tool using versioned containers.

    Python 6

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