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Lab protocols (mostly) developed in Rmarkdown for population genetics and similar applications

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Rbenchwork

Lab protocols (mostly) documented in Rmarkdown and Latex for population genetics and similar applications

Intro

I recently (Sept 2021) wrapped up a series of DNA extractions with associated quality checks and RADseq library preparations in the course of pursuing a masters in fisheries science at Oregon State University. This gave me the chance to iteratively refine the benchwork protocols that I adapted to my purposes (nothing's new under the sun). Rmarkdown files use the Tidyverse flavor of R to produce pdf output that serves as step-by-step reference while at the bench. Some data management pipelines may be useful as well.

Upcoming

Give me a week or two (October) to start sharing these!

Output

Both Rmarkdown (Rmd) and latex files (tex) compile in Rstudio. Overleaf can help with latex edits if you've some extensive mods to make.

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Lab protocols (mostly) developed in Rmarkdown for population genetics and similar applications

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