fix: resolve indexing issues in traceback and bump to 0.5.1 (#30)

Bump version to 0.5.0 (#29)

Bump version to 0.4.0 (#25)

Bump version to 0.3.0 (#20)

refactor: Major API rename and release automation (#15)

* refactor: Major API rename and release automation

This commit introduces a significant internal refactoring, prepares the package for automated PyPI releases, and improves documentation.

Core Refactoring:
- Rename core data structures for clarity and consistency:
  - `AlignFrag` -> `AlignmentFragment`
  - `FragType` -> `FragmentType`
- Rename the primary `Alignment` field from `align_frag` to `fragments`.
- Update all Rust code, Python utilities, and tests to reflect these new names.

CI/CD and Publishing:
- Update `.github/workflows/release.yaml` to fully automate PyPI publishing.
- Add a dedicated job to build the source distribution (`sdist`).
- Implement publishing to PyPI using the secure trusted publishing method.
- Update the GitHub Release assets job to include the `sdist`.

Documentation & Dependencies:
- Update `README.md` to fix the logo image link and provide a more concise overview of features with a link to the full documentation.
- Add `twine` and its transitive dependencies to `uv.lock` for publishing.
- Increment package version to 0.1.1 in `pyproject.toml`.

* Update pyproject.toml

Co-authored-by: gemini-code-assist[bot] <176961590+gemini-code-assist[bot]@users.noreply.github.com>

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Co-authored-by: gemini-code-assist[bot] <176961590+gemini-code-assist[bot]@users.noreply.github.com>

fix yaml lint