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Flatiron Institute

@simonsfoundation

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339 followers
New York City
https://flatironinstitute.org/

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CaImAn CaImAn Public

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

Python 701 391
finufft finufft Public

Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

C++ 387 96
DeepFRI DeepFRI Public

Deep functional residue identification

Python 341 86
CaImAn-MATLAB CaImAn-MATLAB Public

Complete Matlab pipeline for large scale calcium imaging data analysis

MATLAB 259 150
NoRMCorre NoRMCorre Public

Matlab routines for online non-rigid motion correction of calcium imaging data

MATLAB 153 97
deepblast deepblast Public

Neural Networks for Protein Sequence Alignment

Python 134 23

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Showing 10 of 218 repositories

walnuts Public
Within-orbit Adaptive Leapfrog No-U-Turn Sampler

flatironinstitute/walnuts’s past year of commit activity

C++ 29 MIT 1 9 (1 issue needs help) 3 Updated Dec 13, 2025
ccq-software-build Public
CCQ software build scripts

flatironinstitute/ccq-software-build’s past year of commit activity

Shell 12 6 0 0 Updated Dec 12, 2025
nemos Public
NEural MOdelS, a statistical modeling framework for neuroscience.

flatironinstitute/nemos’s past year of commit activity

Python 112 MIT 13 129 (1 issue needs help) 5 Updated Dec 12, 2025
nixpack Public
nix+spack = nixpack (spanix?)

flatironinstitute/nixpack’s past year of commit activity

Nix 49 MIT 6 2 4 Updated Dec 11, 2025
spack-packages Public Forked from spack/spack-packages
Spack's community package recipes

flatironinstitute/spack-packages’s past year of commit activity

Python 0 Apache-2.0 480 0 0 Updated Dec 11, 2025
figpack Public
A Python package for creating shareable, interactive, browser-based visualizations

flatironinstitute/figpack’s past year of commit activity

TypeScript 15 Apache-2.0 0 3 0 Updated Dec 11, 2025
dmk Public
A Dual-space Multilevel Kernel-splitting (DMK) Framework for Discrete and Continuous Convolution

flatironinstitute/dmk’s past year of commit activity

C++ 14 4 12 (1 issue needs help) 1 Updated Dec 11, 2025
jaxmg Public
jaxmg: A distributed linear solver in JAX with cuSolverMg

flatironinstitute/jaxmg’s past year of commit activity

Jupyter Notebook 13 Apache-2.0 1 0 1 Updated Dec 10, 2025
finufft Public
Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

flatironinstitute/finufft’s past year of commit activity

C++ 387 96 49 (3 issues need help) 5 Updated Dec 10, 2025
masala_public Public
The public repository for the Core library of the Masala software suite. Masala is a set of free and open-source tools for biomolecular modelling, with a plugin-based infrastructure that makes it easy to extend other software.

flatironinstitute/masala_public’s past year of commit activity

C++ 8 AGPL-3.0 1 0 0 Updated Dec 10, 2025

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