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AlphaFastPPi
AlphaFastPPi PublicFast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening
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Genome-Plasticity
Genome-Plasticity PublicScripts used for computing Flux of Genes Segments (FOGS), which enable to quantify the rate of gene acquisition or loss events within a collection of bacterial genomes
Python 3
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phylo_pipe
phylo_pipe PublicForked from FabioMIDI/phylo_pipe
A pipeline to perform phylogenesis from protein sequences
Python
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Acb_MLST
Acb_MLST PublicA collection of scripts used for performing the analyses in the manuscript: "Comparative analysis of the two Acinetobacter baumannii multilocus sequence typing (MLST) schemes"
Python
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Repositories
- Borrelia-WGA-Project Public
Scripts and additional data generated while developing WGA protocol for Borrelia sequencing
MIDIfactory/Borrelia-WGA-Project’s past year of commit activity - Genome-Plasticity Public
Scripts used for computing Flux of Genes Segments (FOGS), which enable to quantify the rate of gene acquisition or loss events within a collection of bacterial genomes
MIDIfactory/Genome-Plasticity’s past year of commit activity - AlphaFastPPi Public
Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening
MIDIfactory/AlphaFastPPi’s past year of commit activity - cryptosporidium_parvum_evolution Public
Repository containing scripts related to the research paper 'Comparative Genomics of Cryptosporidium parvum: Uncovering the Emergence of an Outbreak-Associated Population in Europe and Its Transmission to the USA.'
MIDIfactory/cryptosporidium_parvum_evolution’s past year of commit activity - Bioinformatics2023 Public
Material for the Bioinformatics course 2022/23, Molecular Biology and Genetics, University of Pavia
MIDIfactory/Bioinformatics2023’s past year of commit activity - MIDIfactory Public
MIDIfactory/MIDIfactory’s past year of commit activity - Acb_MLST Public
A collection of scripts used for performing the analyses in the manuscript: "Comparative analysis of the two Acinetobacter baumannii multilocus sequence typing (MLST) schemes"
MIDIfactory/Acb_MLST’s past year of commit activity - NGS_HCV Public
MIDIfactory/NGS_HCV’s past year of commit activity - phylo_pipe Public Forked from FabioMIDI/phylo_pipe
A pipeline to perform phylogenesis from protein sequences
MIDIfactory/phylo_pipe’s past year of commit activity
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