Search results

Integrate Gosling into dataset uploader tool

goslingIssues related to the gosling epigenome component in gEARIssues related to the gosling epigenome component in gEAR

Page: dataset uploader

Status: Open.

Feature

#1158 In IGS/gEAR;

· adkinsrs opened on Nov 18, 2025

Curators - Various customization features

Low PriorityNot the biggest concern at the moment. Also includes "nice to haves"Not the biggest concern at the moment. Also includes "nice to haves"

Page: multigene curatorSubtasks related to the multigene curator utility and its displaysSubtasks related to the multigene curator utility and its displays

Page: single gene curator

Status: Open.

Feature

#1154 In IGS/gEAR;

· adkinsrs opened on Nov 12, 2025

N top genes functionality error

Page: single-cell workbench

Status: Open.

Bug

#1152 In IGS/gEAR;

· harjiji14 opened on Nov 10, 2025

orthology mapping edge case returns None/null

Page: search display pagesThis includes gene expression and projection displaysThis includes gene expression and projection displays

Status: Open.

Bug

#1150 In IGS/gEAR;

· adkinsrs opened on Nov 7, 2025

Option to collapse entire functional annotation

Page: search display pagesThis includes gene expression and projection displaysThis includes gene expression and projection displays

Status: Open.

Feature

#1149 In IGS/gEAR;

· adkinsrs opened on Oct 31, 2025

Download expression values from multigene displays

Page: multigene curatorSubtasks related to the multigene curator utility and its displaysSubtasks related to the multigene curator utility and its displays

user requestA enhancement or functionality requested directly by a userA enhancement or functionality requested directly by a user

Status: Open.

Feature

#1148 In IGS/gEAR;

· carlocolantuoni opened on Oct 30, 2025

Migrate from diffxpy to PyDESeq2

3rd-party toolRelated to exploring or integrating third-party tools, databases, etcRelated to exploring or integrating third-party tools, databases, etc

Low PriorityNot the biggest concern at the moment. Also includes "nice to haves"Not the biggest concern at the moment. Also includes "nice to haves"

Page: multigene curatorSubtasks related to the multigene curator utility and its displaysSubtasks related to the multigene curator utility and its displays

Status: Open.

Task

#1146 In IGS/gEAR;

· adkinsrs opened on Oct 26, 2025

move projection outputs into "cached" directory

code cleanupFix the ugly, inefficient or just plain bad.Fix the ugly, inefficient or just plain bad.

projectR

Status: Open.

Task

#1143 In IGS/gEAR;

· adkinsrs opened on Oct 22, 2025

Better control user-submitted library_strategy values

Status: Open.

#1142 In IGS/gEAR;

· jorvis opened on Oct 17, 2025

Need a way to track counts of permalink usage for stats

good first issueGood for newcomersGood for newcomers

Status: Open.

#1136 In IGS/gEAR;

· jorvis opened on Oct 7, 2025

Evaluate how we're handling individual datasets vs collections in the selector

Status: Open.

#1135 In IGS/gEAR;

· jorvis opened on Oct 7, 2025

Explore dropping matplotlib for umap/tsne plots

Status: Open.

#1134 In IGS/gEAR;

· jorvis opened on Oct 7, 2025