GitHub - GTell88/NGScode: notebooks for working with HIV NGS data

GTell88 / NGScode Public

notebooks for working with HIV NGS data

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Name		Name	Last commit message	Last commit date
Latest commit History 15 Commits
.ipynb_checkpoints		.ipynb_checkpoints
Differences.ipynb		Differences.ipynb
EDA.ipynb		EDA.ipynb
NGS Diversity Comparisons.ipynb		NGS Diversity Comparisons.ipynb
NGS Diversity.ipynb		NGS Diversity.ipynb
NGS LDA 2.ipynb		NGS LDA 2.ipynb
NGS LDA DIVERSITY FILTER.ipynb		NGS LDA DIVERSITY FILTER.ipynb
NGS LDA.ipynb		NGS LDA.ipynb
Reconstruction Phylogeny.ipynb		Reconstruction Phylogeny.ipynb
Regression Analysis.ipynb		Regression Analysis.ipynb
Sanger Analysis.ipynb		Sanger Analysis.ipynb
Sanger Diversity.ipynb		Sanger Diversity.ipynb
SimulatedData.ipynb		SimulatedData.ipynb
Step1_Translate.ipynb		Step1_Translate.ipynb
Step2B_ConsensusAndReconstructions.ipynb		Step2B_ConsensusAndReconstructions.ipynb
Step2_Frequency.ipynb		Step2_Frequency.ipynb
Step3_MergeNGS.ipynb		Step3_MergeNGS.ipynb
Step4_LoadClinical.ipynb		Step4_LoadClinical.ipynb
Step5_Merge_NGS_and_Clinical.ipynb		Step5_Merge_NGS_and_Clinical.ipynb
Step7_statsmodels_LogisticRegression.ipynb		Step7_statsmodels_LogisticRegression.ipynb
Step8_PairwiseComparisons.ipynb		Step8_PairwiseComparisons.ipynb
Step9_ConsensusApproach.ipynb		Step9_ConsensusApproach.ipynb
permut_DF.csv		permut_DF.csv