plotter

Visualization tool to plot composites at reference points & regions of interest

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Generating data for the app

The utils directory contains :

Script	Description
createFastaData.py	creates a POSTable JSON file from csv file with nucleotide values
generateJson.py	creates an intermediate JSON file from csv file with Composite values
appendScalingFactor.py	adds scaling factors to the intermediate JSON and generate the final POSTable JSON

Input data format and script usage

Script	Usage example
createFastaData.py	python createFastaData.py sampleData/rawFasta.csv
generateJson.py	python generateJson.py sampleData/rawComposite.csv > sampleData/exampleComposite.json
appendScalingFactor.py	python appendScalingFactor.py sampleData/scalingFactors_tt.csv sampleData/exampleComposite.json