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Commits on Dec 12, 2016

• Rename CHANGELOG to CHANGELOG.md

  andreasprlic

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• Update CHANGELOG

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• Update CHANGELOG

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Commits on Dec 7, 2016

• Merge pull request #611 from andreasprlic/phosphosite

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  josemduarte

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Commits on Nov 30, 2016

• addressing requested changes re. throwing exceptions.

  andreasprlic

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• moving to Java 7

  andreasprlic

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• now also accepting old header line

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• #610 switching test to junit version 4

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Commits on Nov 29, 2016

• creating local dir, if it does not exist.

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• fix for #610

  andreasprlic

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• Merge branch 'master' of github.com:andreasprlic/biojava

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Commits on Nov 28, 2016

• Moving integration tests to the end of the module list

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Commits on Nov 24, 2016

• Merge pull request #605 from josemduarte/nonStandardChecks

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Commits on Nov 23, 2016

• Adding non-standard sg check to pdb parser

  josemduarte

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• Fixed bug: NPE for CrystalBuilder on 4hhb. Moved TestCrystalBuilder to integrationtest.

  josemduarte

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• Now using the new fields from CrystalBuilder

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Commits on Nov 22, 2016

• Some extra rare fields in atom_sites

  josemduarte

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• Fixing npe introduced in last commit

  josemduarte

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• Implementing new crystallographic metadata fields.

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• Javadoc correction

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• Merge pull request #604 from josemduarte/parseScaleMatrix

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• Implementing parsing of atom_sites category in mmcif parser/consumer

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Commits on Nov 21, 2016

• Merge pull request #600 from sbliven/fix557

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Commits on Nov 16, 2016

• Merge branch 'master' of github.com:biojava/biojava

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Commits on Nov 10, 2016

• Merge pull request #597 from sbliven/fix560

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• Add CHANGELOG with description of #560 changes

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• Allow partial residue ranges (#557)

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• Merge branch 'master' into 'fix557', keeping only master

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• Merge pull request #595 from abradle/alpha_fix

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Commits on Nov 9, 2016

• Merge pull request #598 from sbliven/fix596

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• Fix #596. Remove test for GenBank identifier parsing

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Commits on Nov 7, 2016

• Update to biojava 5.0 ligand and chain model

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Commits on Nov 2, 2016

• Moved addGroupToStructure methods to StructureTools

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Commits on Oct 26, 2016

• Add some handling of "?" in seq align position. E.g. for 5dn6

  abradle

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Commits on Oct 3, 2016

• Fix unit tests

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