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Commits on May 17, 2023

• delete: useless files

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• add: very simple example training set

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• add: seaborn dependency to bichrom.yml

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Commits on Nov 18, 2022

• Update README.md

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• add: instructions on model inference

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Commits on Sep 9, 2022

• Minor bug fix: incorrect chromatin input shape for prediciton

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Commits on Sep 8, 2022

• Add legend to PR curve plot

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Commits on Sep 3, 2022

• Update README.md

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Commits on Aug 2, 2022

• Add script for predicting on bed file input

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Commits on Jun 22, 2022

• Minor fix

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• Add drop_remainder flag to avoid dropping data when testing

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Commits on Jun 21, 2022

• Minor fix

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• Remove shuffling for test dataset

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• Minor fix: Remove peaks with neg start

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Commits on Apr 25, 2022

• Bug fix: ignored chromatin track leads to tensorflow unable parse TFRecord

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Commits on Mar 18, 2022

• Update README.md

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Commits on Mar 7, 2022

• Update README.md

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• Add pyyaml dependency

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• Remove pip requirements.txt

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• Update conda env yaml file

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Commits on Feb 24, 2022

• New sample preperation strategy

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Commits on Feb 18, 2022

• Minor bug fix

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Commits on Feb 17, 2022

• Add learning scheduler for SGD

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• Increase precision of metrics

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• Clean scripts

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Commits on Feb 10, 2022

• Merge branch 'TFRecord' of https://github.com/seqcode/Bichrom into TFRecord

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• Minor fix

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• Merge branch 'TFRecord' of https://github.com/seqcode/Bichrom into TFRecord

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• Add args for test and validation chromosomes

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Commits on Feb 8, 2022

• Upgrade dependencies

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• Fix small errors and add evaluate model

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• Increase the ratio of negative flanking samples

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Commits on Feb 4, 2022

• Save coordinates in bed and Optimization

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• Minor fix

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• Minor fix

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