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Commits on Aug 30, 2018

• Release 1.5.2 (#529)

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• Update CHANGELOG (#528)

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• Remove unused imports (#527)

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• Use quoted split pattern for barcodes (#526)

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Commits on Aug 27, 2018

• Release 1.5.1 (#523)

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• Update CHANGELOG (#522)

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• Clean up code and fix typos (#521)

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• Barcode file with empty header throws user error (#520)

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• Allow Casava formatted read names with barcode separators (#519)

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• Add stacktrace always to unexpected errors (#517)

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Commits on Aug 24, 2018

• Fix SRA Handbook link (#516)

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Commits on Aug 5, 2018

• Update CHANGELOG with latest commits (#503)

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• Improve help for cli calling removed tools (#502)

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• Upgrade gradle to 4.9 and improve build (#501)

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Commits on Jul 27, 2018

• Release 1.5.0 (#497)

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• Update CHANGELOG before release (#496)

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• Create tmp directory in scripts/prepare_release.sh (#495)

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• Implement experimental GemMappabilityToBed tool (#491)

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• Fix typo in README (and add entry to CHANGELOG)

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• Update CHANGELOG with latest changes (#492)

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• Upgrade GATK to 4.0.6.0 and htsjdk to 2.16.0 (#487)

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• Update site dependencies (#490)

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Commits on Jul 25, 2018

• Implement GEM-mappability reader (#480)

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• Force locale for base test class (#485)

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Commits on Jul 15, 2018

• Extend BaseTest to simplify RTBaseTest (#477)

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Commits on Jul 13, 2018

• Remove unneeded usages of GATKRead defensive getters (#476)

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• Upgrade gradle to 4.8.1 and plugin versions (#478)

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Commits on Jun 11, 2018

• Release 1.4.1 (#475)

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• Add latest fixes to CHANGELOG (#474)

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• Support java.nio.Path with FASTQ input files (#473)

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Commits on Jun 7, 2018

• Add DownloadDistmapResult check for _SUCCESS on startup (#471)

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Commits on Jun 5, 2018

• Release 1.4.0 (#468)

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• Update CHANGELOG before release (#467)

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• Modify templates to integrate beta/experimental features (#457)

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• Add ComputeProperStatByWindow experimental tool (#464)

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