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Commits on Jul 1, 2025

• Merge pull request #1 from keyuxi/nnn

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Commits on Apr 18, 2025

• Add ame version numbers; README small update

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  00b4eb9

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Commits on Oct 16, 2024

• Resolve merge conflict

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• Add conda version numbers and update README

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Commits on May 23, 2022

• add singularity container

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  3b2108b

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Commits on Mar 15, 2022

• Edited files to analyze 20220314 data

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• got rid of some hidden files

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• fairly stable version for fitting

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  d49d1b3

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• iron out the whole fitting process

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Commits on Jan 14, 2022

• first version of refine fitting plus making a smaller cluster annotation file from CPseq

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Commits on Jan 10, 2022

• implement fit fmax fmin distribution

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Commits on Jan 8, 2022

• Updated bootstrapfit file and started to work on findfmaxfmin

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Commits on Jan 6, 2022

• Fix sequencingResult bug in Snakefile and rerun Oct6 alignment with the correct nupack annotation file

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  5b59e8b

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• first run of bootstrapFitFile

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  b4e9b1c

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Commits on Jan 3, 2022

• post array analysis for Nov11 chip

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Commits on Dec 9, 2021

• single clulster fitting on sherlock

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  cfb5a9a

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• Implement single cluster fit with new version of lmfit

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Commits on Dec 8, 2021

• version before I gave up simply modifying Sarah's codebase

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Commits on Dec 7, 2021

• Add normalization and single cluster fit to snakemake (in progress)

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• merge fitting scripts on main to nnn

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  8a0e157

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• Implemented single cluster melt curve fit

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Commits on Dec 6, 2021

• Converted fitting scripts to py3 and modified single cluster fit

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Commits on Dec 5, 2021

• Merge branch 'nnn' of https://github.com/keyuxi/array_analysis into nnn

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• Add normalize signal script

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Commits on Nov 23, 2021

• made script copies for nnn fitting

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  0db1403

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• add normalization script

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  27b922c

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• clean up scripts

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  3c04279

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• update sequence alignment

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Commits on Nov 18, 2021

• changed 3prime align to current version

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Commits on Nov 17, 2021

• add README docs

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  280ea34

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• fixed Snakefile conflict

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  646b578

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• Merge branch 'nnn' into main

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• add pre-array or post-array option

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Commits on Nov 16, 2021

• fixed CPseq output file name discrepancy issue

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• trying to merge branch nnn

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