Synced with the source at 57386fd.

Author: kevinrknox

.buildinfo

@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: 5a37574f6da4dfff2a38854b169a55e3
-tags: fbb0d17656682115ca4d033fb2f83ba1
+config: 7f5e562834d02689a6b10fd7ac918255
+tags: 645f666f9bcd5a90fca523b33c5a78b7

_sources/extending.txt

@@ -22,7 +22,7 @@ a structure.  For example, the ``DiffpyStructureParSet`` structure adapter in
 ``diffpy.srfit.structure.diffpyparset`` contains ``DiffpyLatticeParSet``, which
 encapsulates the lattice data and one ``DiffpyAtomParSet`` per atom.  These
 each contain parameters for what they encapsulate, such as lattice parameters
-or atom positions. 
+or atom positions.
 
 Fundamentally, it is the adjustable parameters of a structure container,
 forward calculator or other object that needs to be adapted so that SrFit can
@@ -46,7 +46,7 @@ to another object when setting or retrieving its value.
 
 
 Here is a simple example of using ``ParameterAdapter`` to adapt a hypothetical
-atom object called ``SimpleAtom`` that has attributes ``x``, ``y`` and ``z``. 
+atom object called ``SimpleAtom`` that has attributes ``x``, ``y`` and ``z``.
 ::
 
     class SimpleAtom(object):
@@ -61,7 +61,7 @@ atom object called ``SimpleAtom`` that has attributes ``x``, ``y`` and ``z``.
     # End class SimpleAtom
 
     class SimpleAtomParSet(ParameterSet):
-        """Class adapting the x, y and z attributes of SimpleAtom as Parameters.""" 
+        """Class adapting the x, y and z attributes of SimpleAtom as Parameters."""
 
         def __init__(self, atom, name):
             ParameterSet.__init__(self, name)
@@ -86,25 +86,25 @@ The ``x``, ``y`` and ``z`` attributes (specified by the ``attr`` keyword
 argument of ``ParameterAdapter``) of a ``SimpleAtom`` are wrapped as
 ``ParameterAdapter`` objects named `x`, `y`, and `z`.  They are then added to
 the ``SimpleAtomParSet`` using the ``addParameter`` method, which makes them
-accessible as attributes. 
+accessible as attributes.
 
 If SimpleAtom did not have an attribute named ``x``, but rather accessor
 methods named ``getX`` and ``setX``, then the ``ParameterAdapter`` would be
 used as::
 
-    xpar = ParameterAdapter("x", atom, getter = SimpleAtom.getX, 
+    xpar = ParameterAdapter("x", atom, getter = SimpleAtom.getX,
         setter = SimpleAtom.setX)
 
 Note that the *unbound* methods are used. The names ``getter`` and ``setter``
 describe how the accessor attributes are used to access the value of the
 parameter. When ``xpar.getValue()`` is called, it redirects to
-``SimpleAtom.getX(atom)``. 
+``SimpleAtom.getX(atom)``.
 
 If instead ``SimpleAtom`` had methods called ``get`` and ``set`` that take as
 the second argument the name of the attribute to retrieve or modify, then this
 can be adapted as::
 
-    xpar = ParameterAdapter("x", atom, getter = SimpleAtom.get, 
+    xpar = ParameterAdapter("x", atom, getter = SimpleAtom.get,
             setter = SimpleAtom.set, attr = "x")
 
 Thus, when ``xpar.getValue()`` is called, it in turn calls
@@ -190,7 +190,7 @@ arrays when their corresponding attributes are modified. This keeps the arrays
 in sync.
 
 
-Custom Restraints 
+Custom Restraints
 ----------------------------------------
 
 Restraints in SrFit are one way to include known information about a system
@@ -223,7 +223,7 @@ and calculated BVS of a structure.
 
 Note that the penalty scaling is optional (selected by the `scaled` flag) and
 uncertainty on the result (`sig`) may be applied. These two options are
-recommended with any custom ``Restraint``. 
+recommended with any custom ``Restraint``.
 
 The second part of a custom restraint is to allow it to be created from a
 restrainable object. A ``BVSRestraint`` is used to restrain a ``SrRealParSet``,

_sources/intro.txt

@@ -38,7 +38,7 @@ database structure to aid post analysis. We will also support CIF input and
 output of structure models. SrFit will support user-specified analytic math
 functions and numerical algorithms for rapid prototyping of new ideas. A
 contingent item will be to support experimental feedback to the
-data-acquisition system. 
+data-acquisition system.
 
 Features
 -----------
@@ -71,7 +71,7 @@ Major changes since last release
  * Various interface changes.
 
    * pdfnpgenerator module renamed debyepdfgenerator.
-   * nanoformfactors module renamed characteristicfunctions.  
+   * nanoformfactors module renamed characteristicfunctions.
    * Form factors renamed from xyzFF to xyzCF.
    * Structure adapters renamed for clarification. The monikers "Structure" and
      "stru" are reserved for structure representations from outside of SrFit

_static/basic.css

@@ -4,7 +4,7 @@
  *
  * Sphinx stylesheet -- basic theme.
  *
- * :copyright: Copyright 2007-2011 by the Sphinx team, see AUTHORS.
+ * :copyright: Copyright 2007-2013 by the Sphinx team, see AUTHORS.
  * :license: BSD, see LICENSE for details.
  *
  */
@@ -89,6 +89,7 @@ div.sphinxsidebar #searchbox input[type="submit"] {
 
 img {
     border: 0;
+    max-width: 100%;
 }
 
 /* -- search page ----------------------------------------------------------- */
@@ -401,10 +402,6 @@ dl.glossary dt {
     margin: 0;
 }
 
-.refcount {
-    color: #060;
-}
-
 .optional {
     font-size: 1.3em;
 }

_static/default.css

@@ -4,7 +4,7 @@
  *
  * Sphinx stylesheet -- default theme.
  *
- * :copyright: Copyright 2007-2011 by the Sphinx team, see AUTHORS.
+ * :copyright: Copyright 2007-2013 by the Sphinx team, see AUTHORS.
  * :license: BSD, see LICENSE for details.
  *
  */

_static/doctools.js

@@ -4,7 +4,7 @@
  *
  * Sphinx JavaScript utilities for all documentation.
  *
- * :copyright: Copyright 2007-2011 by the Sphinx team, see AUTHORS.
+ * :copyright: Copyright 2007-2013 by the Sphinx team, see AUTHORS.
  * :license: BSD, see LICENSE for details.
  *
  */
@@ -32,7 +32,7 @@ if (!window.console || !console.firebug) {
  */
 jQuery.urldecode = function(x) {
   return decodeURIComponent(x).replace(/\+/g, ' ');
-}
+};
 
 /**
  * small helper function to urlencode strings
@@ -61,18 +61,6 @@ jQuery.getQueryParameters = function(s) {
   return result;
 };
 
-/**
- * small function to check if an array contains
- * a given item.
- */
-jQuery.contains = function(arr, item) {
-  for (var i = 0; i < arr.length; i++) {
-    if (arr[i] == item)
-      return true;
-  }
-  return false;
-};
-
 /**
  * highlight a given string on a jquery object by wrapping it in
  * span elements with the given class name.
@@ -180,6 +168,9 @@ var Documentation = {
     var terms = (params.highlight) ? params.highlight[0].split(/\s+/) : [];
     if (terms.length) {
       var body = $('div.body');
+      if (!body.length) {
+        body = $('body');
+      }
       window.setTimeout(function() {
         $.each(terms, function() {
           body.highlightText(this.toLowerCase(), 'highlighted');