Commits

Branch selector

 develop

User selector

All users

Datepicker

All time

Commit History

Commits on Mar 26, 2014

• Bumped to v1.0.0-SNAPSHOT; began renaming CyPath2 to CyPathwayCommons here and there (yet, maven artifact id and the bundle name are kept the same as before); edited the description and menu options.

  IgorRodchenkov

  committed
  c893a95

  Copy full SHA for c893a95

Commits on Jan 22, 2014

• Implemented Apps->CyPath2: Expand Network… node view context menu feature (creates a new PC network by executing a neighbourhood or paths between graph query from selected nodes). Polished previous…

  Show description for fde76e4
  IgorRodchenkov

  committed
  fde76e4

  Copy full SHA for fde76e4

Commits on Jan 21, 2014

• Changed the Cy API dependency so that the Apps Store displays the minimum required Cy version as 3.1 (not 3.2 as before)

  IgorRodchenkov

  committed
  c412be8

  Copy full SHA for c412be8

• Implemented a new feature: can use a user-provided list of IDs for a graph query (in the ‘Advanced Query’ tab panel; this works if there are corresponding Xrefs in the PC db, right away or after in…

  Show description for 1a301b5
  IgorRodchenkov

  committed
  1a301b5

  Copy full SHA for 1a301b5

Commits on Nov 4, 2013

• Restricted Cy3 api versions to >3.1.0; upgraded Paxtools dependency.

  IgorRodchenkov

  committed
  e95e538

  Copy full SHA for e95e538

Commits on Oct 27, 2013

• Added visual legend for BioPAX-SIF node types (colour, shape)

  IgorRodchenkov

  committed
  3fef897

  Copy full SHA for 3fef897

• Fixed the empty network name issue (incorrect use of names and the built-in biopax reader, post-processing). Implemented the "Filter Edges" (SIF views) that was available in Cy 2.8. Improved "Node …

  Show description for ac8b15c
  IgorRodchenkov

  committed
  ac8b15c

  Copy full SHA for ac8b15c

Commits on Oct 17, 2013

• Most network/view creation work is now done via BioPAX reader. Right "results" panel works (shows the style's legend, node details, etc..)

  IgorRodchenkov

  committed
  3c4ab39

  Copy full SHA for 3c4ab39

Commits on Oct 10, 2013

• Moved some resources from the biopax app

  IgorRodchenkov

  committed
  d85b54f

  Copy full SHA for d85b54f

Commits on Oct 9, 2013

• Update README.md

  IgorRodchenkov

  committed
  ee75bc4

  Copy full SHA for ee75bc4

• (in the middle of) re-factoring due to the BioPAX plugin changes...

  IgorRodchenkov

  committed
  5ea21eb

  Copy full SHA for 5ea21eb

• Merge branch 'develop' of https://github.com/PathwayCommons/CyPath2 into develop

  IgorRodchenkov

  committed
  5d9ec90

  Copy full SHA for 5d9ec90

• Initial commit

  IgorRodchenkov

  committed
  e7b264b

  Copy full SHA for e7b264b

Commits on Aug 28, 2013

• Fixing biopax/sif visual style/legend/layout - delegated to the modified (today) biopax-impl core bundle.

  IgorRodchenkov

  committed
  a641f75

  Copy full SHA for a641f75

Commits on Aug 22, 2013

• Fixes Issue #12. Also, made the Results Panel (in fact, - managed by the biopax-impl core app) display correct Visual Legend, i.e., SIF or BioPAX, for the networks generated from Pathway Commons d…

  Show description for efc54e3
  IgorRodchenkov

  committed
  efc54e3

  Copy full SHA for efc54e3

Commits on Aug 16, 2013

• A tiny typo fixed

  IgorRodchenkov

  committed
  227fac3

  Copy full SHA for 227fac3

Commits on Aug 14, 2013

• Bumped version number (next devel.)

  IgorRodchenkov

  committed
  418b45f

  Copy full SHA for 418b45f

• Polished the text in the Filter Options. Released as v0.4.1.

  IgorRodchenkov

  committed
  9407684

  Copy full SHA for 9407684

Commits on Aug 13, 2013

• Fixed JAXB related bugs (mostly in app's dependencies); Also, modified the search hits summary/details panel (bottom-right) and made the app send not too many requests to the server (it does not se…

  Show description for 51b219c
  IgorRodchenkov

  committed
  51b219c

  Copy full SHA for 51b219c

Commits on Jul 10, 2013

• Bumped to v0.4 and began adding node context menu (+ some int. refactoring)…

  IgorRodchenkov

  committed
  5cc2ad6

  Copy full SHA for 5cc2ad6

Commits on Jul 5, 2013

• Fixed issue #4 : created menu items and actions under Apps->CyPath2. Polished the UI (alignment, resize) and POM (dependencies).

  IgorRodchenkov

  committed
  09d51c0

  Copy full SHA for 09d51c0

Commits on Jul 2, 2013

• Will use new default server URL (http://www.pathwaycommons.org/pc2/ - one can change it by editing ~/CytoscapeConfiguration/cytoscape3.props); also, updated the cpath-client dependency (to the late…

  Show description for 61c383b
  IgorRodchenkov

  committed
  61c383b

  Copy full SHA for 61c383b

Commits on Jun 13, 2013

• Removed the old class. Updated TODOs and comments.

  IgorRodchenkov

  committed
  7f2438b

  Copy full SHA for 7f2438b

• Bumped to 0.2.1-SNAPSHOT and made several fixes, such as: alerts are now displayed in a modal dialog (for some error or no result cases); cpath2 server URL can be set via the cytoscape3.props; tune…

  Show description for 990c3b0
  IgorRodchenkov

  committed
  990c3b0

  Copy full SHA for 990c3b0

Commits on Jun 6, 2013

• Fixed the app/bundle name.

  IgorRodchenkov

  committed
  5c5fd3a

  Copy full SHA for 5c5fd3a

Commits on Jun 5, 2013

• Hide the organisms filter options for now (always 9606 Homo sapiens is used - all queries)

  IgorRodchenkov

  committed
  fcdeaba

  Copy full SHA for fcdeaba

• Fixed node attributes when created from SIF formatted query results; moved filter options to the Options panel/tab; etc.

  IgorRodchenkov

  committed
  3193e88

  Copy full SHA for 3193e88

Commits on Jun 4, 2013

• Updated (in fact, re-factored) to use the latest cpath2 client (and POST requests). Fixed problems with links in the bottom (details) panel, etc…

  IgorRodchenkov

  committed
  d39aef3

  Copy full SHA for d39aef3

Commits on May 30, 2013

• Made it work in Cy3 again (fixed dependencies/embeding); continue updating UI, etc…

  IgorRodchenkov

  committed
  59eb047

  Copy full SHA for 59eb047

Commits on May 27, 2013

• updated to paxtools v4.2.0

  IgorRodchenkov

  committed
  973888f

  Copy full SHA for 973888f

Commits on May 15, 2013

• modified project configuration and dependencies; TODO: debug…

  Show description for 211f30a
  IgorRodchenkov

  committed
  211f30a

  Copy full SHA for 211f30a

Commits on May 8, 2013

• follow-up to the previous changeset

  IgorRodchenkov

  committed
  90e6f37

  Copy full SHA for 90e6f37

• Changed groupID and artifactID, renamed java packages accordingly, bumped the version (moved files around)

  IgorRodchenkov

  committed
  5c8f151

  Copy full SHA for 5c8f151

• bumped core dependencies' versions

  IgorRodchenkov

  committed
  7329b0d

  Copy full SHA for 7329b0d

Commits on Apr 20, 2013

• Updated to the latest PC2 instance and cpath-client lib.

  IgorRodchenkov

  committed
  aeb4012

  Copy full SHA for aeb4012

Pagination

Previous

Next