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Commits on Sep 1, 2025

• adding new human genome

  fasnicar

  committed
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Commits on Apr 18, 2025

• adding Drosophila melanogaster (GCF_000001215) genome

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Commits on Apr 11, 2025

• preprocessing restructuring

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Commits on Jul 24, 2024

• update

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Commits on Jul 23, 2024

• adding Cercopithecus and Tamarin host genomes

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Commits on Jul 22, 2024

• update

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Commits on Nov 24, 2023

• fixing os.path function

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Commits on Nov 16, 2023

• paired-end info used for highly contaminated samples

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Commits on Jul 6, 2022

• adding two lemurs genomes

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Commits on Jul 5, 2022

• reverse sorting to avoid samples with common prefix being moved to only one folder

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Commits on Jan 26, 2022

• add --rm_pcin param for Koala's host genome removal

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Commits on Nov 23, 2021

• updating samplename when splitting and sorting

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Commits on Oct 19, 2021

• fixing fwd and rev in samplename

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• fixing fwd and rev in sample name

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Commits on Aug 13, 2021

• adding script to fix permission of preprocessed files from the cluster and updating the demux template script

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  committed
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• adding script to fix permission of preprocessed files from the cluster and updating the demux template script

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  committed
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• adding to trim_galore "-j 1" to be sure it runs in single-core mode

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Commits on Mar 25, 2021

• updating paths

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Commits on Jul 30, 2020

• update version

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• remove intermediate stats files

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Commits on May 20, 2020

• update

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Commits on Apr 2, 2020

• noarch package

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• expliciting --extract

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• adding gitignore

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• updating default database location

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Commits on Mar 27, 2020

• adding script for fastqc

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Commits on Mar 25, 2020

• Merge branch 'master' of github.com:SegataLab/preprocessing

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• updating conda recipe

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• Update README.md

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Commits on Mar 24, 2020

• tools paths updated

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Commits on Feb 19, 2020

• adding script to produce summary table after preproc

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Commits on Feb 14, 2020

• removing mercurial

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Commits on Jan 15, 2020

• adding sample name and other checks

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Commits on Nov 11, 2019

• fixing tuple

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Commits on Nov 3, 2019

• fixing random swap of R1 with R2

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