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Commits on Aug 27, 2025

• Merge pull request #19 from ProteinDesignLab/tianyu/link-to-1c

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  tianyu-lu

  authored
  dc7c9e4

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• Revise README: deprecation notice and new repo link

  tianyu-lu

  authored
  ffbd470

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Commits on Feb 18, 2025

• device assert error

  gelnesr

  authored
  5dcdd17

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Commits on Dec 1, 2024

• Merge pull request #17 from ProteinDesignLab/jinho/fixed_main_1

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  zhkim216

  authored
  7870923

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• my_pdb.pdb -> example.pdb & change the description in README

  

  Jinho Kim

  committed
  18a8196

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Commits on Nov 21, 2024

• Fixed a bug where the stage 2 sample's backbone was not fixed during stage 2 sampling, and added motif scaffolding function and configurations.

  

  Jinho Kim

  committed
  274511a

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Commits on Nov 12, 2024

• example pdb

  

  Jinho Kim

  committed
  24a696a

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• updated sampling configs

  

  Jinho Kim

  committed
  c3af92e

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• added motif scaffolding code, bug fixed

  

  Jinho Kim

  committed
  578655c

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• fix README

  

  Jinho Kim

  committed
  ab6e730

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• update README

  

  Jinho Kim

  committed
  840050a

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• delete gitattributes

  

  Jinho Kim

  committed
  6de7689

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• Track large files with Git LFS

  

  Jinho Kim

  committed
  81401c6

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• initial test

  

  Jinho Kim

  committed
  2ad4e1c

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Commits on Jul 16, 2024

• Merge pull request #11 from ProteinDesignLab/jinho/fixed_main

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  zhkim216

  authored
  7d42fc9

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Commits on Jul 12, 2024

• Delete sampling.py

  zhkim216

  authored
  bb00eb2

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• deleted pycache, sampling.py -> inference.py

  

  Jinho Kim

  committed
  4b778c5

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Commits on Jul 9, 2024

• changed sampling.py -> inference.py

  

  Jinho Kim

  committed
  fc812a1

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• Update draw_samples.py

  zhkim216

  authored
  d79b0ba

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• Delete checkpoints/backbone_old_state_dict.pth

  zhkim216

  authored
  37e05bc

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• Delete checkpoints/backbone_old.yml

  zhkim216

  authored
  1ddc73f

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• Delete checkpoints/backbone_new.yml

  zhkim216

  authored
  a94297c

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• Delete checkpoints/allatom_pretrained.yml

  zhkim216

  authored
  6d755a5

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• lfs test

  

  Jinho Kim

  committed
  0358ed0

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• configs changed, clean up codes

  

  Jinho Kim

  committed
  c466e31

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Commits on Jul 8, 2024

• black, deleted pycache

  

  Jinho Kim

  committed
  34bfe30

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Commits on Jun 10, 2024

• Remove outdated files

  

  Jinho Kim

  committed
  7f0a39f

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• new backbone weight

  

  Jinho Kim

  committed
  33fe20a

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• create .gitattributes

  

  Jinho Kim

  committed
  bff4697

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• .

  

  Jinho Kim

  committed
  f3571a4

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• ProteinMPNN

  

  Jinho Kim

  committed
  c25c8f8

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• sampling bug fixed

  

  Jinho Kim

  committed
  98bb497

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Commits on Mar 29, 2024

• Merge pull request #5 from ProteinDesignLab/aec/inference

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  alexechu

  authored
  d769514

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Commits on Mar 21, 2024

• Add code for likelihoods/encoding and scaffolding benchmark

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  Alex E Chu

  committed
  bbae6e4

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Commits on Dec 1, 2023

• Update backbone sampling config

  alexechu

  authored
  50f45d8

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