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Commits on Dec 2, 2013

• small cleanup

  

  Andreas Prlic

  committed
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Commits on Nov 29, 2013

• cleanup

  andreasprlic

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• removing external dependency on log4j

  andreasprlic

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Commits on Nov 28, 2013

• Merge pull request #80 from emckee2006/master

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  andreasprlic

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Commits on Nov 27, 2013

• Merge pull request #8 from biojava/master

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  emckee2006

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• Update method comment to indicate legal calling sequences for using

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  emckee2006

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• Add a test case based on Daniel Cameron's example of failing FeatureList

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  emckee2006

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• Merge pull request #79 from pwrose/master

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  andreasprlic

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• Merge pull request #7 from biojava/master

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  emckee2006

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Commits on Nov 23, 2013

• Removing ScopDatabase from AtomCache

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  sbliven

  committed
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• RotationAxis: better handling of translational movements

  sbliven

  committed
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• Cleanup and minor bug fixes

  sbliven

  committed
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Commits on Nov 22, 2013

• Initialize list of bonds lazily. The bond list in an Atom is now

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  pwrose

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• Checking for empty SCOP files

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  sbliven

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Commits on Nov 21, 2013

• Merge pull request #73 from andreasprlic/master

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  andreasprlic

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• some cleanup

  andreasprlic

  committed
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Commits on Nov 20, 2013

• Merge pull request #6 from biojava/master

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  emckee2006

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• updating example to latest API

  andreasprlic

  committed
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Commits on Nov 19, 2013

• Fix ScopFactory bug

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  sbliven

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• Fix a NullPointer in createAFPChain

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  sbliven

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Commits on Nov 15, 2013

• Merge pull request #5 from biojava/master

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  emckee2006

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Commits on Nov 13, 2013

• Check in of Cox Regression code for survival analysis ported from the R survival package

  

  Scooter

  authored and

  Scooter

  committed
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• Test Committ

  

  Scooter

  authored and

  Scooter

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Commits on Nov 11, 2013

• Merge pull request #4 from biojava/master

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  emckee2006

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Commits on Nov 7, 2013

• renaming submodule

  

  Andreas Prlic

  committed
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• adding new survival module

  

  Andreas Prlic

  committed
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• adding new survival module

  

  Andreas Prlic

  committed
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Commits on Nov 4, 2013

• uncommenting version 1.75B and .175C until #69 gets resolved

  

  Andreas Prlic

  committed
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• Merge pull request #3 from biojava/master

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  emckee2006

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Commits on Nov 2, 2013

• small performance improvement

  andreasprlic

  committed
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• adding a unit test fot #68

  andreasprlic

  committed
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• fixing #68

  andreasprlic

  committed
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Commits on Nov 1, 2013

• Adding setScopVersion() method to ScopDatabase

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  sbliven

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• Adding version to RemoteScopInstallation

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  sbliven

  committed
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• Implementing comments for remote SCOP installations

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  sbliven

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