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Commits on Nov 11, 2019

• Merge pull request #124 from kathyxchen/selene-v043

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• selene minor release update to 0.4.3

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Commits on Nov 4, 2019

• Merge pull request #123 from kathyxchen/multimodel-cuda

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• bugfix, allows multimodelwrapper to be used with cuda

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Commits on Sep 27, 2019

• Merge pull request #120 from kathyxchen/report_unkbase_prediction

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• formatting fixes

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• doc edit for get_encoding_from_coords_check_unknown

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• Minor improvement to doc of _not_blacklist_region

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• addressing suggestion to pull request https://github.com/FunctionLab/selene/pull/120; redirect all skipped rows to .NA file.

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Commits on Sep 24, 2019

• fixed na file writing and removed unused code

  jzthree

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• open .NA output file with 'w' instead of 'a' too

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Commits on Sep 23, 2019

• simplify fasta / bed file recognition

  jzthree

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• Merge pull request #119 from kathyxchen/master

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• update selene-sdk to version 0.4.2

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• Merge pull request #117 from kathyxchen/multi-model-wrap

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• documentation update

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Commits on Sep 17, 2019

• get predictions for single-entry bed file

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Commits on Sep 16, 2019

• add eval override function to wrapper

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• sub models check for lua model

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• add multimodelwrapper class

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• Merge branch 'master' into multi-model-wrap

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Commits on Sep 12, 2019

• Merge pull request #116 from kathyxchen/bugfixes-1

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• style fix

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• tensor shape fix for danQ arch

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• minor clean-up

  jzthree

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• handles blacklist regions for prediction

  jzthree

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• start new hdf5 file instead of modifying the original file if the file exists

  jzthree

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• recognize fasta / bed format based on file extension (avoid generating empty fai files for bed files)

  jzthree

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• removing bounding coordinate when computing coords for bed file (given that padding is now supported)

  jzthree

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• write header for row_labels file

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Commits on Sep 11, 2019

• when sequence contains UNK_BASE output warning and assign True to contains_unk column

  jzthree

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• fix np function call

  kathyxchen

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• minor edits to danQ class to match deepsea.py

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• set up AnalyzeSequences for multimodel wrapper

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Commits on Sep 9, 2019

• formatting fix

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