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Commits on Nov 1, 2018

• Release v0.12

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  WilliamKMLai

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• Bug-fix for BED files not containing strand information

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Commits on Oct 31, 2018

• Tag Pileup Total Tag normalization with Blacklist filtering

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• Added Blacklist parameter

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• Scaling Ratio Change

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• Blacklist Total-Tag normalization

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• Set heatmap output to not output by default

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• Heatmap Defaults

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• Check for valid scaling ratios before beginning

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• Matrix Number Error Checking

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Commits on Oct 30, 2018

• Matrix scaling script

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• Cell selection for individual cells

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Commits on Oct 29, 2018

• NCIS blacklist upgrade

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Commits on Oct 26, 2018

• NCIS

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  WilliamKMLai

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• Fixed missing header name ‘unaligned reads’

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• Remove redundant file

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Commits on Oct 18, 2018

• Added general file selection script using a String ext variable.

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  WilliamKMLai

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• Missed moving signal duplication to new folder during last overhaul.

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Commits on Aug 30, 2018

• Merge remote-tracking branch 'origin/master'

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• Contrast threshold hot fix

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  WilliamKMLai

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Commits on Aug 29, 2018

• Update README.md

  WilliamKMLai

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Commits on Aug 24, 2018

• Bug fix

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  WilliamKMLai

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• Resolves #34

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• Makes merge window narrower relative to length since the vast majority

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  WilliamKMLai

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• Significant folder reorganization and interface update

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  WilliamKMLai

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Commits on Aug 10, 2018

• Update README.md

  WilliamKMLai

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Commits on Jun 25, 2018

• Fixes #22

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  William Lai

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Commits on Jun 22, 2018

• Genome-genome correlation #24

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  William Lai

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• Extra safety check and additional comment to prevent improper pileup

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  William Lai

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Commits on Jun 20, 2018

• PEStats output filename

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  William Lai

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• also output # unaligned reads in BAM file

  

  William Lai

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• PEStats duplication

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  William Lai

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Commits on Jun 15, 2018

• Interface upgrade to Basic BAM Stats

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  William Lai

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• Merge redundant utility classes

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  William Lai

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Commits on Jun 14, 2018

• Update README file

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  William Lai

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