Commits

Branch selector

 devel

User selector

All users

Datepicker

All time

Commit History

Commits on Dec 17, 2025

• version bump 1.57.1

  LiNk-NY

  committed
  d9a5b88

  Copy full SHA for d9a5b88

• use simplified link for combined class and constructor docs

  LiNk-NY

  committed
  b68aea1

  Copy full SHA for b68aea1

• add package anchors to cross-refs

  LiNk-NY

  committed
  88b7fbb

  Copy full SHA for 88b7fbb

Commits on Oct 29, 2025

• bump x.y.z version to odd y following creation of RELEASE_3_22 branch

  jwokaty

  committed
  0da7ddb

  Copy full SHA for 0da7ddb

• bump x.y.z version to even y prior to creation of RELEASE_3_22 branch

  jwokaty

  committed
  dc8ecd1

  Copy full SHA for dc8ecd1

Commits on Oct 16, 2025

• improving unit tests for 3.22

  vjcitn

  committed
  af7ae49

  Copy full SHA for af7ae49

Commits on Jun 20, 2025

• VariantAnnotation 1.55.1: Depends on Seqinfo instead of GenomeInfoDb

  hpages

  committed
  5b9c386

  Copy full SHA for 5b9c386

Commits on Apr 15, 2025

• bump x.y.z version to odd y following creation of RELEASE_3_21 branch

  jwokaty

  committed
  4e5e6a2

  Copy full SHA for 4e5e6a2

• bump x.y.z version to even y prior to creation of RELEASE_3_21 branch

  jwokaty

  committed
  c2a1b2c

  Copy full SHA for c2a1b2c

Commits on Jan 7, 2025

• VariantAnnotation 1.53.1

  Show description for 6f599d0
  hpages

  committed
  6f599d0

  Copy full SHA for 6f599d0

Commits on Oct 29, 2024

• bump x.y.z version to odd y following creation of RELEASE_3_20 branch

  jwokaty

  committed
  478ea77

  Copy full SHA for 478ea77

• bump x.y.z version to even y prior to creation of RELEASE_3_20 branch

  jwokaty

  committed
  054eb39

  Copy full SHA for 054eb39

Commits on Oct 23, 2024

• block a test that thwarts propagation for bioc 3.20, but seems itself in error

  vjcitn

  committed
  06d9afa

  Copy full SHA for 06d9afa

Commits on Sep 25, 2024

• VariantAnnotation 1.51.1

  Show description for dd9dfef
  hpages

  committed
  dd9dfef

  Copy full SHA for dd9dfef

Commits on Apr 30, 2024

• bump x.y.z version to odd y following creation of RELEASE_3_19 branch

  jwokaty

  committed
  6d549f2

  Copy full SHA for 6d549f2

• bump x.y.z version to even y prior to creation of RELEASE_3_19 branch

  jwokaty

  committed
  7805cec

  Copy full SHA for 7805cec

Commits on Mar 26, 2024

• The makeTxDb*() functions have moved from GenomicFeatures to txdbmaker

  hpages

  committed
  038a3fc

  Copy full SHA for 038a3fc

Commits on Jan 26, 2024

• tools from ensemblVEP REST API are added here to permit deprecation of ensemblVEP

  vjcitn

  committed
  885878b

  Copy full SHA for 885878b

Commits on Jan 12, 2024

• Fix gcc's "format-security" warning

  hpages

  committed
  1ec6c25

  Copy full SHA for 1ec6c25

Commits on Jan 10, 2024

• addressing issue 79 by correcting the value of Number in info(header()) for ExpandedVCF instance

  vjcitn

  committed
  e3103a5

  Copy full SHA for e3103a5

• removing non-standard GATK-related records from extdata/hapmap_exome_chr22.vcf, then bgzip and tabix indexing

  vjcitn

  committed
  6189404

  Copy full SHA for 6189404

Commits on Nov 15, 2023

• Fix long-standing bug in .Call ENTRY POINT make_vcf_geno

  hpages

  committed
  092eba4

  Copy full SHA for 092eba4

Commits on Oct 31, 2023

• Version bump to trigger rebuilt of binaries against Rhtslib 2.99.0

  hpages

  committed
  280af2d

  Copy full SHA for 280af2d

Commits on Oct 24, 2023

• bump x.y.z version to odd y following creation of RELEASE_3_18 branch

  jwokaty

  committed
  281cc3f

  Copy full SHA for 281cc3f

• bump x.y.z version to even y prior to creation of RELEASE_3_18 branch

  jwokaty

  committed
  2a148c9

  Copy full SHA for 2a148c9

Commits on Jun 2, 2023

• Bump version to 1.47.1

  jwokaty

  committed
  bfbf45d

  Copy full SHA for bfbf45d

• Convert VariantAnnotation.Rnw, filterVcf.Rnw to VariantAnnotation.Rmd, filterVcf.Rmd (#67)

  Show description for e2e982c
  

  villafup

  and

  jwokaty

  authored
  e2e982c

  Copy full SHA for e2e982c

Commits on Apr 25, 2023

• bump x.y.z version to odd y following creation of RELEASE_3_17 branch

  jwokaty

  committed
  a203349

  Copy full SHA for a203349

• bump x.y.z version to even y prior to creation of RELEASE_3_17 branch

  jwokaty

  committed
  80d43e0

  Copy full SHA for 80d43e0

Commits on Feb 14, 2023

• Add updateObject() method for VCF objects

  Show description for d006bb5
  hpages

  committed
  d006bb5

  Copy full SHA for d006bb5

Commits on Nov 1, 2022

• bump x.y.z version to odd y following creation of RELEASE_3_16 branch

  jwokaty

  committed
  3fc786d

  Copy full SHA for 3fc786d

• bump x.y.z version to even y prior to creation of RELEASE_3_16 branch

  jwokaty

  committed
  2e7e0a3

  Copy full SHA for 2e7e0a3

Commits on Aug 11, 2022

• Replace defunct SNPlocs.Hsapiens.dbSNP.20101109 with SNPlocs.Hsapiens.dbSNP144.GRCh37

  hpages

  committed
  505509c

  Copy full SHA for 505509c

Commits on May 13, 2022

• Version bump

  Show description for f1f06c6
  hpages

  committed
  f1f06c6

  Copy full SHA for f1f06c6

Commits on May 6, 2022

• Version bump for approved PRs

  Kayla-Morrell

  committed
  1e979f1

  Copy full SHA for 1e979f1

Pagination

Previous

Next